Backend Operations Manager Shopify Stores | Disputes, Supply Chain & CS (Long-Term, Full-Time)

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TYPE OF WORK

Full Time

WAGE / SALARY

$5-§15/hour

HOURS PER WEEK

50

DATE UPDATED

Jun 5, 2026

JOB OVERVIEW

We're a fast-growing e-commerce group operating 16–30 Shopify stores across multiple legal entities. We work with a dedicated fulfillment partner (DayOne) and an external advertising agency running Google Shopping at scale. Our volume sits at 100+ disputes per week across Shopify Payments, PayPal, and Whop, plus daily supplier coordination, customer service oversight, and agency communication via Slack.
We're not a side hustle. This is a serious operation, and we're building it like one.

What we're hiring for:
We're looking for a Backend Operations Manager — a true A-player who can take the operational weight off the founder's shoulders. You will own the day-to-day backend of the business: disputes, chargebacks, supply chain, customer service, and partner communication. If you've ever felt like you were carrying a whole company on your back and want a place that rewards that — we want to talk.

What you'll own (of course, we have teams with employees and managers in each department, but you will be ultimately responsible for all departments):

Disputes & Chargebacks (~40% of role)
* Manage 100+ disputes per week across Shopify Payments, PayPal, and Whop
* Build and execute evidence packages following our internal SOPs
* Track win rates per processor, per store, per reason code
* Identify patterns (fraud rings, recurring chargeback reasons) and flag them upstream
* Coordinate with PayPal/Stripe support when escalations are needed

Supply Chain & Supplier Coordination (~25%)
* Daily communication with our fulfillment partner (DayOne) via Slack
* Verify supplier invoices against our internal quote sheet (Empire X DayOne)
* Flag discrepancies, missing SKUs, pricing mismatches
* Track shipping issues, lost packages, returns
* Coordinate inventory questions across multiple stores/entities

Customer Service Oversight (~20%)
* Manage CS workflows across our store portfolio
* Handle escalations that frontline agents can't resolve
* Spot recurring issues and turn them into process improvements
* Keep response-time SLAs in check

Who you are
This is a backend manager role, not a VA role. We're looking for someone who:
- Has run operations for multi-store Shopify or DTC businesses before (not just one store)
- Has serious experience with PayPal disputes and Shopify Payments chargebacks at volume — you know what "compelling evidence" actually means and which arguments win
- Has worked with fulfillment partners and knows how to read an invoice critically
- Communicates in clear, professional English — written and spoken
- Lives in Slack comfortably and can hold structured conversations across multiple channels
- Is proactive — you don't wait to be told what to do, you spot problems and propose fixes
- Is calm under volume — 100+ disputes a week doesn't faze you
- Owns outcomes, not tasks

Must-haves:
- 3+ years managing operations for an e-commerce business (Shopify preferred)
- Hands-on experience defending chargebacks (Shopify Payments AND PayPal — not just one)
- Comfortable working with multiple legal entities, multiple stores, multiple payment processors
- Excellent written English
- Self-managed — full-time available, reliable internet, professional setup
- Available full-time (50 hrs/week), long-term commitment

Nice-to-haves
+ Experience with Whop disputes
+ Familiarity with Google Shopping feeds (Simprosys, Multifeeds, Pythago)
+ Experience working with external ad agencies
+ Background in fashion / branded DTC
+ Process documentation experience (writing SOPs, training others)
+ Comfort working with AI tools (we're heavily AI-augmented and will give you serious AI leverage)

What we offer:
+ Long-term, full-time role — we're hiring for years, not weeks
+ Competitive rate based on experience (range: $12–20/hr, open to higher for the right person)
+ Real ownership — you'll be the backend, not just a task-taker
+ AI leverage — we build AI agents to do the repetitive work so you can focus on judgment calls
+ Growth path — as we scale to 50+ stores and a $100M brand portfolio, this role grows with us
+ Direct access to the founder — no middle layers, no politics, no nonsense

How to apply
We get a lot of templated applications. Here's how to make sure we read yours:
Start your cover letter with the word "EMPIRE" so we know you actually read this post.
Then, in your application, briefly tell us:

- How many Shopify stores have you managed simultaneously, and which payment processors did they use?
- What's the highest dispute/chargeback volume you've handled in a single week? What was your win rate?
- Tell us about a time you caught a supplier invoice error. What was the discrepancy and how much did you save?
- What's your timezone, and what hours can you commit to overlapping with CET (Netherlands)?
- Why this role specifically — what about it fits where you want to go in the next 2–3 years?

Applications without these answers will not be reviewed.

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